Build versions and config tests#
Versions#
import scooby
scooby.Report(additional=['pemtk','epsproc','xarray', 'pandas', 'scipy', 'matplotlib','jupyterlab','plotly','holoviews'])
* sparse not found, sparse matrix forms not available.
* natsort not found, some sorting functions not available.
* Setting plotter defaults with epsproc.basicPlotters.setPlotters(). Run directly to modify, or change options in local env.
* Set Holoviews with bokeh.
* pyevtk not found, VTK export not available.
OMP: Info #276: omp_set_nested routine deprecated, please use omp_set_max_active_levels instead.
| Thu Dec 07 10:51:01 2023 EST | |||||||
| OS | Linux | CPU(s) | 64 | Machine | x86_64 | Architecture | 64bit |
| RAM | 62.8 GiB | Environment | Jupyter | File system | btrfs | ||
| Python 3.10.11 | packaged by conda-forge | (main, May 10 2023, 18:58:44) [GCC 11.3.0] | |||||||
| pemtk | 0.0.1 | epsproc | 1.3.2-dev | xarray | 2022.3.0 | pandas | 1.5.3 |
| scipy | 1.10.1 | matplotlib | 3.5.3 | jupyterlab | 3.6.3 | plotly | 5.15.0 |
| holoviews | 1.16.2 | numpy | 1.23.5 | IPython | 8.13.2 | scooby | 0.7.2 |
!jupyter-book --version
Jupyter Book : 0.15.1
External ToC : 0.3.1
MyST-Parser : 0.18.1
MyST-NB : 0.17.2
Sphinx Book Theme : 1.0.1
Jupyter-Cache : 0.6.1
NbClient : 0.7.4
!jupyter --version
Selected Jupyter core packages...
IPython : 8.13.2
ipykernel : 6.23.0
ipywidgets : 8.0.6
jupyter_client : 8.2.0
jupyter_core : 5.3.0
jupyter_server : 2.5.0
jupyterlab : 3.6.3
nbclient : 0.7.4
nbconvert : 7.4.0
nbformat : 5.8.0
notebook : 6.5.4
qtconsole : not installed
traitlets : 5.9.0
Docker build env#
# Container name from within running container (from https://stackoverflow.com/a/64790547)
!dig -x `ifconfig eth0 | grep 'inet' | awk '{print $2}'` +short | cut -d'.' -f1
QM3-jupyterlab-local-190723
Book versions#
QMpath = '/home/jovyan/QM3'
!git -C {QMpath} branch
!git -C {QMpath} log --format="%H" -n 1
gh-pages
main
* postSubmissionUpdates
reviewJuly2023
7ef784d423d4225e715ff567a101b22815635eef
# Check current remote commits
!git ls-remote --heads https://github.com/phockett/Quantum-Metrology-with-Photoelectrons-Vol3
e791590f875cde788620591fcc6fc47c409b92e7 refs/heads/gh-pages
8fba30f39135996a784b7d030cf908d63b484249 refs/heads/main
7ef784d423d4225e715ff567a101b22815635eef refs/heads/postSubmissionUpdates
863f1a92533b5ced778b263cd00f09ae3cfc9eb3 refs/heads/reviewJuly2023
Github pkg versions#
from pathlib import Path
import epsproc as ep
ep.__file__
'/home/jovyan/github/ePSproc/epsproc/__init__.py'
import pemtk as pm
pm.__file__
'/home/jovyan/github/PEMtk/pemtk/__init__.py'
# Check current Git commit for local ePSproc version - NOTE THIS ONLY WORKS FOR INSTALLED FROM GIT CLONES
# from pathlib import Path
# import epsproc as ep
!git -C {Path(ep.__file__).parent} branch
!git -C {Path(ep.__file__).parent} log --format="%H" -n 1
* 3d-AFPAD-dev
c1eedf10631cb17fe33421427c195a2391369c37
# Check current remote commits
!git ls-remote --heads https://github.com/phockett/ePSproc
c1eedf10631cb17fe33421427c195a2391369c37 refs/heads/3d-AFPAD-dev
897d73392a7b32ffba4ca6b6b4755c61e7c1c8d7 refs/heads/dependabot/pip/notes/envs/envs-versioned/certifi-2022.12.7
457f8cd85d89bd6474296b6c01e5165a4a7ce7fc refs/heads/dependabot/pip/notes/envs/envs-versioned/cryptography-39.0.1
2855573d0f088b45d19acf2fd9a71eeb7af0a29b refs/heads/dependabot/pip/notes/envs/envs-versioned/ipython-8.10.0
92c661789a7d2927f2b53d7266f57de70b3834fa refs/heads/dependabot/pip/notes/envs/envs-versioned/mistune-2.0.3
fe1e9540c7b91fe571f60562acd31d8e489d491e refs/heads/dependabot/pip/notes/envs/envs-versioned/nbconvert-6.5.1
70b80a1e3a54de91c2bfe3b6be82d611fcfd5f43 refs/heads/dependabot/pip/notes/envs/envs-versioned/pillow-9.3.0
92fc79b09aafedadcb645f88bb7ed771c96d5b52 refs/heads/dependabot/pip/notes/envs/envs-versioned/setuptools-65.5.1
fa33ed8d63a5c4a4043cc4c261059cc09e4c2bf7 refs/heads/dependabot/pip/notes/envs/envs-versioned/wheel-0.38.1
41cdfe43750e08c510f98b05e024a9c62da42771 refs/heads/dependabot/pip/setuptools-65.5.1
7e4270370d66df44c334675ac487c87d702408da refs/heads/dev
1c0b8fd409648f07c85f4f20628b5ea7627e0c4e refs/heads/master
69cd89ce5bc0ad6d465a4bd8df6fba15d3fd1aee refs/heads/numba-tests
ea30878c842f09d525fbf39fa269fa2302a13b57 refs/heads/revert-9-master
baf0be0c962e8ab3c3df57c8f70f0e939f99cbd7 refs/heads/testDev
# Check current Git commit for local ePSproc version - NOTE THIS ONLY WORKS FOR INSTALLED FROM GIT CLONES
# from pathlib import Path
# import epsproc as ep
!git -C {Path(pm.__file__).parent} branch
!git -C {Path(pm.__file__).parent} log --format="%H" -n 1
* master
465c161ca9d2c2f453a58f16c8f334f5e2c07eaa
# Check current remote commits
!git ls-remote --heads https://github.com/phockett/PEMtk
465c161ca9d2c2f453a58f16c8f334f5e2c07eaa refs/heads/master
3f4686dffdbb310f15692f978ba36d6a3d15e8d3 refs/heads/mfFittingDev
Full conda env#
!conda list
# packages in environment at /opt/conda:
#
# Name Version Build Channel
_libgcc_mutex 0.1 conda_forge conda-forge
_openmp_mutex 4.5 2_kmp_llvm conda-forge
accessible-pygments 0.0.4 pypi_0 pypi
aiofiles 22.1.0 pyhd8ed1ab_0 conda-forge
aiosqlite 0.19.0 pyhd8ed1ab_0 conda-forge
alabaster 0.7.13 pypi_0 pypi
alembic 1.10.4 pyhd8ed1ab_0 conda-forge
altair 5.0.0 pyhd8ed1ab_0 conda-forge
ansi2html 1.8.0 py310hff52083_1 conda-forge
anyio 3.6.2 pyhd8ed1ab_0 conda-forge
aom 3.5.0 h27087fc_0 conda-forge
argon2-cffi 21.3.0 pyhd8ed1ab_0 conda-forge
argon2-cffi-bindings 21.2.0 py310h5764c6d_3 conda-forge
arrow 1.2.3 pypi_0 pypi
arrow-cpp 12.0.0 ha770c72_1_cpu conda-forge
asteval 0.9.31 pyhd8ed1ab_0 conda-forge
astropy 5.3.1 py310h278f3c1_0 conda-forge
asttokens 2.2.1 pyhd8ed1ab_0 conda-forge
async_generator 1.10 py_0 conda-forge
attrs 23.1.0 pyh71513ae_1 conda-forge
aws-c-auth 0.6.26 h2c7c9e7_6 conda-forge
aws-c-cal 0.5.26 h71eb795_0 conda-forge
aws-c-common 0.8.17 hd590300_0 conda-forge
aws-c-compression 0.2.16 h4f47f36_6 conda-forge
aws-c-event-stream 0.2.20 h69ce273_6 conda-forge
aws-c-http 0.7.7 h7b8353a_3 conda-forge
aws-c-io 0.13.21 h2c99d58_4 conda-forge
aws-c-mqtt 0.8.6 h3a1964a_15 conda-forge
aws-c-s3 0.2.8 h0933b68_4 conda-forge
aws-c-sdkutils 0.1.9 h4f47f36_1 conda-forge
aws-checksums 0.1.14 h4f47f36_6 conda-forge
aws-crt-cpp 0.19.9 h85076f6_5 conda-forge
aws-sdk-cpp 1.10.57 hf40e4db_10 conda-forge
babel 2.12.1 pyhd8ed1ab_1 conda-forge
backcall 0.2.0 pyh9f0ad1d_0 conda-forge
backports 1.0 pyhd8ed1ab_3 conda-forge
backports.functools_lru_cache 1.6.4 pyhd8ed1ab_0 conda-forge
beautifulsoup4 4.12.2 pyha770c72_0 conda-forge
blas 2.116 openblas conda-forge
blas-devel 3.9.0 16_linux64_openblas conda-forge
bleach 6.0.0 pyhd8ed1ab_0 conda-forge
blinker 1.6.2 pyhd8ed1ab_0 conda-forge
blosc 1.21.3 hafa529b_0 conda-forge
bokeh 3.1.1 pyhd8ed1ab_0 conda-forge
boltons 23.0.0 pyhd8ed1ab_0 conda-forge
boost-cpp 1.78.0 h6582d0a_3 conda-forge
bottleneck 1.3.7 py310h0a54255_0 conda-forge
brotli 1.0.9 h166bdaf_8 conda-forge
brotli-bin 1.0.9 h166bdaf_8 conda-forge
brotlipy 0.7.0 py310h5764c6d_1005 conda-forge
brunsli 0.1 h9c3ff4c_0 conda-forge
bzip2 1.0.8 h7f98852_4 conda-forge
c-ares 1.18.1 h7f98852_0 conda-forge
c-blosc2 2.8.0 hf91038e_1 conda-forge
ca-certificates 2023.7.22 hbcca054_0 conda-forge
cached-property 1.5.2 hd8ed1ab_1 conda-forge
cached_property 1.5.2 pyha770c72_1 conda-forge
cairo 1.16.0 h35add3b_1015 conda-forge
cartopy 0.21.1 py310h7eb24ba_1 conda-forge
certifi 2023.7.22 pyhd8ed1ab_0 conda-forge
certipy 0.1.3 py_0 conda-forge
cffi 1.15.1 py310h255011f_3 conda-forge
cfitsio 4.2.0 hd9d235c_0 conda-forge
cftime 1.6.2 py310hde88566_1 conda-forge
charls 2.4.1 hcb278e6_0 conda-forge
charset-normalizer 3.1.0 pyhd8ed1ab_0 conda-forge
click 8.1.3 unix_pyhd8ed1ab_2 conda-forge
cloudpickle 2.2.1 pyhd8ed1ab_0 conda-forge
colorama 0.4.6 pyhd8ed1ab_0 conda-forge
colorcet 3.0.1 pyhd8ed1ab_0 conda-forge
comm 0.1.3 pyhd8ed1ab_0 conda-forge
conda 23.3.1 py310hff52083_0 conda-forge
conda-package-handling 2.0.2 pyh38be061_0 conda-forge
conda-package-streaming 0.7.0 pyhd8ed1ab_1 conda-forge
configurable-http-proxy 4.5.4 h3b247e2_2 conda-forge
contourpy 1.0.7 py310hdf3cbec_0 conda-forge
cryptography 40.0.2 py310h34c0648_0 conda-forge
curl 8.0.1 h588be90_0 conda-forge
cycler 0.11.0 pyhd8ed1ab_0 conda-forge
cython 0.29.34 py310heca2aa9_0 conda-forge
cytoolz 0.12.0 py310h5764c6d_1 conda-forge
dash 2.11.1 pyhd8ed1ab_0 conda-forge
dask 2023.5.0 pyhd8ed1ab_0 conda-forge
dask-core 2023.5.0 pyhd8ed1ab_0 conda-forge
dav1d 1.0.0 h166bdaf_1 conda-forge
dcw-gmt 2.1.1 ha770c72_0 conda-forge
debugpy 1.6.7 py310heca2aa9_0 conda-forge
decorator 5.1.1 pyhd8ed1ab_0 conda-forge
defusedxml 0.7.1 pyhd8ed1ab_0 conda-forge
dill 0.3.6 pyhd8ed1ab_1 conda-forge
distributed 2023.5.0 pyhd8ed1ab_0 conda-forge
docutils 0.18.1 pypi_0 pypi
ducc0 0.31.0 py310hc6cd4ac_0 conda-forge
entrypoints 0.4 pyhd8ed1ab_0 conda-forge
et_xmlfile 1.1.0 pyhd8ed1ab_0 conda-forge
exceptiongroup 1.1.2 pyhd8ed1ab_0 conda-forge
executing 1.2.0 pyhd8ed1ab_0 conda-forge
expat 2.5.0 hcb278e6_1 conda-forge
fftw 3.3.10 nompi_hc118613_108 conda-forge
firefox 115.0 hd3aeb46_0 conda-forge
flask 2.3.2 pyhd8ed1ab_0 conda-forge
flit-core 3.9.0 pyhd8ed1ab_0 conda-forge
fmt 9.1.0 h924138e_0 conda-forge
font-ttf-dejavu-sans-mono 2.37 hab24e00_0 conda-forge
font-ttf-inconsolata 3.000 h77eed37_0 conda-forge
font-ttf-source-code-pro 2.038 h77eed37_0 conda-forge
font-ttf-ubuntu 0.83 hab24e00_0 conda-forge
fontconfig 2.14.2 h14ed4e7_0 conda-forge
fonts-conda-ecosystem 1 0 conda-forge
fonts-conda-forge 1 0 conda-forge
fonttools 4.39.4 py310h2372a71_0 conda-forge
fqdn 1.5.1 pypi_0 pypi
freetype 2.12.1 hca18f0e_1 conda-forge
freexl 1.0.6 h166bdaf_1 conda-forge
fsspec 2023.5.0 pyh1a96a4e_0 conda-forge
future 0.18.3 pyhd8ed1ab_0 conda-forge
gdal 3.6.4 py310hf0ca374_2 conda-forge
geckodriver 0.33.0 hd2f7af9_0 conda-forge
geos 3.11.2 hcb278e6_0 conda-forge
geotiff 1.7.1 h480ec47_8 conda-forge
gettext 0.21.1 h27087fc_0 conda-forge
gflags 2.2.2 he1b5a44_1004 conda-forge
ghostscript 9.54.0 h27087fc_2 conda-forge
ghp-import 2.1.0 pypi_0 pypi
giflib 5.2.1 h0b41bf4_3 conda-forge
gitdb 4.0.10 pyhd8ed1ab_0 conda-forge
gitpython 3.1.31 pyhd8ed1ab_0 conda-forge
glog 0.6.0 h6f12383_0 conda-forge
gmp 6.2.1 h58526e2_0 conda-forge
gmpy2 2.1.2 py310h3ec546c_1 conda-forge
gmt 6.4.0 h4733502_10 conda-forge
greenlet 2.0.2 py310hc6cd4ac_1 conda-forge
gshhg-gmt 2.3.7 ha770c72_1003 conda-forge
h11 0.14.0 pyhd8ed1ab_0 conda-forge
h5netcdf 1.2.0 pyhd8ed1ab_0 conda-forge
h5py 3.8.0 nompi_py310ha66b2ad_101 conda-forge
hdf4 4.2.15 h501b40f_6 conda-forge
hdf5 1.14.0 nompi_hb72d44e_103 conda-forge
holoviews 1.16.2 pyhd8ed1ab_0 conda-forge
hvplot 0.8.4 py_0 pyviz
icu 72.1 hcb278e6_0 conda-forge
idna 3.4 pyhd8ed1ab_0 conda-forge
imagecodecs 2023.1.23 py310h241fb82_2 conda-forge
imageio 2.28.1 pyh24c5eb1_0 conda-forge
imagesize 1.4.1 pypi_0 pypi
importlib-metadata 6.6.0 pyha770c72_0 conda-forge
importlib_metadata 6.6.0 hd8ed1ab_0 conda-forge
importlib_resources 5.12.0 pyhd8ed1ab_0 conda-forge
ipykernel 6.23.0 pyh210e3f2_0 conda-forge
ipympl 0.9.3 pyhd8ed1ab_0 conda-forge
ipython 8.13.2 pyh41d4057_0 conda-forge
ipython_genutils 0.2.0 py_1 conda-forge
ipywidgets 8.0.6 pyhd8ed1ab_0 conda-forge
isoduration 20.11.0 pypi_0 pypi
itsdangerous 2.1.2 pyhd8ed1ab_0 conda-forge
jedi 0.18.2 pyhd8ed1ab_0 conda-forge
jinja2 3.1.2 pyhd8ed1ab_1 conda-forge
joblib 1.2.0 pyhd8ed1ab_0 conda-forge
json-c 0.16 hc379101_0 conda-forge
json5 0.9.5 pyh9f0ad1d_0 conda-forge
jsonpatch 1.32 pyhd8ed1ab_0 conda-forge
jsonpointer 2.0 py_0 conda-forge
jsonschema 4.17.3 pyhd8ed1ab_0 conda-forge
jupyter-book 0.15.1 pypi_0 pypi
jupyter-cache 0.6.1 pypi_0 pypi
jupyter-dash 0.4.2 pyhd8ed1ab_1 conda-forge
jupyter-server-mathjax 0.2.6 pyh5bfe37b_1 conda-forge
jupyter_client 8.2.0 pyhd8ed1ab_0 conda-forge
jupyter_core 5.3.0 py310hff52083_0 conda-forge
jupyter_events 0.6.3 pyhd8ed1ab_0 conda-forge
jupyter_server 2.5.0 pyhd8ed1ab_0 conda-forge
jupyter_server_fileid 0.9.0 pyhd8ed1ab_0 conda-forge
jupyter_server_terminals 0.4.4 pyhd8ed1ab_1 conda-forge
jupyter_server_ydoc 0.8.0 pyhd8ed1ab_0 conda-forge
jupyter_telemetry 0.1.0 pyhd8ed1ab_1 conda-forge
jupyter_ydoc 0.2.3 pyhd8ed1ab_0 conda-forge
jupyterhub 4.0.0 pyh2a2186d_0 conda-forge
jupyterhub-base 4.0.0 pyh2a2186d_0 conda-forge
jupyterlab 3.6.3 pyhd8ed1ab_0 conda-forge
jupyterlab-git 0.41.0 pyhd8ed1ab_1 conda-forge
jupyterlab-spellchecker 0.8.3 pypi_0 pypi
jupyterlab_pygments 0.2.2 pyhd8ed1ab_0 conda-forge
jupyterlab_server 2.22.1 pyhd8ed1ab_0 conda-forge
jupyterlab_widgets 3.0.7 pyhd8ed1ab_0 conda-forge
jupytext 1.14.7 pyh5da7574_0 conda-forge
jxrlib 1.1 h7f98852_2 conda-forge
kaleido-core 0.2.1 h3644ca4_0 conda-forge
kealib 1.5.1 h3845be2_3 conda-forge
keyutils 1.6.1 h166bdaf_0 conda-forge
kiwisolver 1.4.4 py310hbf28c38_1 conda-forge
krb5 1.20.1 h81ceb04_0 conda-forge
latexcodec 2.0.1 pypi_0 pypi
lazy_loader 0.2 pyhd8ed1ab_0 conda-forge
lcms2 2.15 haa2dc70_1 conda-forge
ld_impl_linux-64 2.40 h41732ed_0 conda-forge
lerc 4.0.0 h27087fc_0 conda-forge
libabseil 20230125.0 cxx17_hcb278e6_1 conda-forge
libaec 1.0.6 hcb278e6_1 conda-forge
libarchive 3.6.2 h3d51595_0 conda-forge
libarrow 12.0.0 h1cdf7b0_1_cpu conda-forge
libavif 0.11.1 h5cdd6b5_0 conda-forge
libblas 3.9.0 16_linux64_openblas conda-forge
libbrotlicommon 1.0.9 h166bdaf_8 conda-forge
libbrotlidec 1.0.9 h166bdaf_8 conda-forge
libbrotlienc 1.0.9 h166bdaf_8 conda-forge
libcblas 3.9.0 16_linux64_openblas conda-forge
libcrc32c 1.1.2 h9c3ff4c_0 conda-forge
libcurl 8.0.1 h588be90_0 conda-forge
libdeflate 1.18 h0b41bf4_0 conda-forge
libedit 3.1.20191231 he28a2e2_2 conda-forge
libev 4.33 h516909a_1 conda-forge
libevent 2.1.12 h3358134_0 conda-forge
libexpat 2.5.0 hcb278e6_1 conda-forge
libffi 3.4.2 h7f98852_5 conda-forge
libgcc-ng 12.2.0 h65d4601_19 conda-forge
libgdal 3.6.4 hada8d5e_2 conda-forge
libgfortran-ng 12.2.0 h69a702a_19 conda-forge
libgfortran5 12.2.0 h337968e_19 conda-forge
libglib 2.76.4 hebfc3b9_0 conda-forge
libgomp 12.2.0 h65d4601_19 conda-forge
libgoogle-cloud 2.10.0 hac9eb74_0 conda-forge
libgrpc 1.54.2 hcf146ea_0 conda-forge
libiconv 1.17 h166bdaf_0 conda-forge
libjpeg-turbo 2.1.5.1 h0b41bf4_0 conda-forge
libkml 1.3.0 h37653c0_1015 conda-forge
liblapack 3.9.0 16_linux64_openblas conda-forge
liblapacke 3.9.0 16_linux64_openblas conda-forge
libllvm11 11.1.0 he0ac6c6_5 conda-forge
libmamba 1.4.2 hcea66bb_0 conda-forge
libmambapy 1.4.2 py310h1428755_0 conda-forge
libnetcdf 4.9.2 nompi_hdf9a29f_104 conda-forge
libnghttp2 1.52.0 h61bc06f_0 conda-forge
libnsl 2.0.0 h7f98852_0 conda-forge
libnuma 2.0.16 h0b41bf4_1 conda-forge
libopenblas 0.3.21 pthreads_h78a6416_3 conda-forge
libpng 1.6.39 h753d276_0 conda-forge
libpq 15.3 hbcd7760_0 conda-forge
libprotobuf 3.21.12 h3eb15da_0 conda-forge
librttopo 1.1.0 h0d5128d_13 conda-forge
libsodium 1.0.18 h36c2ea0_1 conda-forge
libsolv 0.7.23 h3eb15da_0 conda-forge
libspatialite 5.0.1 h7d1ca68_25 conda-forge
libsqlite 3.41.2 h2797004_1 conda-forge
libssh2 1.10.0 hf14f497_3 conda-forge
libstdcxx-ng 12.2.0 h46fd767_19 conda-forge
libthrift 0.18.1 h8fd135c_1 conda-forge
libtiff 4.5.0 ha587672_6 conda-forge
libutf8proc 2.8.0 h166bdaf_0 conda-forge
libuuid 2.38.1 h0b41bf4_0 conda-forge
libuv 1.44.2 h166bdaf_0 conda-forge
libwebp-base 1.3.0 h0b41bf4_0 conda-forge
libxcb 1.13 h7f98852_1004 conda-forge
libxml2 2.10.4 hfdac1af_0 conda-forge
libzip 1.9.2 hc929e4a_1 conda-forge
libzlib 1.2.13 h166bdaf_4 conda-forge
libzopfli 1.0.3 h9c3ff4c_0 conda-forge
linkify-it-py 2.0.0 pyhd8ed1ab_0 conda-forge
llvm-openmp 16.0.3 h4dfa4b3_0 conda-forge
llvmlite 0.39.1 py310h58363a5_1 conda-forge
lmfit 1.2.2 pyhd8ed1ab_0 conda-forge
locket 1.0.0 pyhd8ed1ab_0 conda-forge
lz4 4.3.2 py310h0cfdcf0_0 conda-forge
lz4-c 1.9.4 hcb278e6_0 conda-forge
lzo 2.10 h516909a_1000 conda-forge
mako 1.2.4 pyhd8ed1ab_0 conda-forge
mamba 1.4.2 py310h51d5547_0 conda-forge
markdown 3.4.3 pyhd8ed1ab_0 conda-forge
markdown-it-py 2.2.0 pypi_0 pypi
markupsafe 2.1.2 py310h1fa729e_0 conda-forge
mathjax 2.7.7 ha770c72_3 conda-forge
matplotlib 3.5.2 pypi_0 pypi
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